Workplan

WP1 Management, UoB 4 PM

Deliverables

D1.1. Contract with the EC.

D1.2. Consortium Agreement.

D1.3. Periodic reports to the commission

D1.4. Meetings

D1.5. Progress reports by each partner.

WP2 Dissemination, UOB 2 PM, all others 2 PM

Deliverables

D2.1. Published articles.

D2.2. Website

D2.3. Software

D2.4. Industrial Workshop.

D2.5. Edited volume with results of workshop.

WP3 State of the Art UoB 1 PM, all others 1 PM

Deliverables

D3.1. A report describing the current state of the art in the field and presenting an overview over

existing software packages that might be useful, including a glossary of biological terms that

will serve as a reference.

D3.2. A webpage documenting the results of this workpackage; this page will also serve as a

reference throughout the duration of the project.

WP 4 Specification of the properties of cell signaling systems, Uni Jena 4 PM, others 0

Deliverables

D4.1. Document describing the formats for the phenotypic representation of CSNs and their

dynamical behaviour.

D4.2. Document describing the framework to specify the desired computational properties of the

target solution.

D4.3. Software that performs simulation, reads specification of CSN properties, and calculates

fitness for a given CSN and a target CSN.

D4.4. Publication in peer-reviewed journal and/or conference.

D4.5. Software to automate the input of the specification of target CSNs.

WP 5 Fast Evolutionary Algorithms Start Month 0,Uni Jena 9 PM, others 0

Deliverables

D5.1. A report describing the choice of methods.

D5.2. A piece of software that efficiently specifies the fitness of candidate solutions given a

suitable fitness-function.

D5.3. Publication in peer-reviewed journal and/or conference.

WP 6 Evolving Functions in Artificial CSNs Start date M 6, UoB 6 PM Uni Eindhoven 6 PM, Uni Jena 25 PM Uni Dublin 0

Deliverables

D6.1. Software system for evolving CSNs, with associated documentation.

D6.2. Report on experimental results.

D6.3. Publication of results in peer-reviewed journal and/or conference.

WP 7 Modeling Real CSNs Start date M3, UoB 12 PM Uni Jena 7 PM

Deliverables

D7.1. Examples of models of real CSNs.

D7.2. Publication of experimental results..

WP 8 A Predictor for Unknown Components of Partially Known CSNs Start date M 24, UE 6 PM UCD 13 PM

Deliverables

D8.1. Software that predicts the unknown components of partially known CSNs.

D8.2. Publication in peer-reviewed journal and/or conference

WP 9 Crosstalk start date M 0, UoB 21 PM DCU 6 PM

Deliverables

D9.1. Software tools to analyse crosstalking CSNs

D9.2. A series of mathematical models of various degrees of complexity.

D9.3. Publication in peer-reviewed journal and/or conference.

WP 10 ESIGNET A Mathematical Theory of CSNs Start Date M 0, UoB 0 PM, UE 9 PM, UJ 10 PM DCU 5 PM

Deliverables

D10.1. Experimental results of test-simulations of hand-constructed simple CSNs.

D10.2. A report detailing the results of this workpackage.

D10.3. Publication of results in peer-reviewed journal and/or conferences.

WP 11 Verification of CSN behaviour Start date M 0, UE 12 PM others 0

Deliverables

D11.1. Technical report detailing the results of the aaplication of model checking tools to CSNs.

D11.2. Several prototype implementations of the theoretical results on top of Spin (improved state

D11.3. space reduction algorithms).

D11.4. A report detailing the methodologies for reverse and forward engineering of CSNs.

D11.5. Publications in peer-reviewed journals and/or conferences.

WP 12 Dynamics of particle interactions Start date M9, UE 24 PM others O

Deliverables

D12.1. Software to transfer CSNs to the molecular dynamics + artificial chemistry package

D12.2. Report on experimental results

D12.3. Publications in peer-reviewed journals and/or conferences

WP 13 Closure in CSNs Start date M 0, UoB 6 PM DCU 27 PM

Deliverables

D13.1. Software to evolve a closed control systems of CSNs.

D13.2. Report summarising results of this workpackage.

D13.3. Publications in peer-reviewed journal and/or conference..

Author: : root -- 17.1.2006 2:06:18

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